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Pumpkin Cheese Stuffed Shells Bolognese Bake…the perfect warming dinner to welcome the start of autumn. It’s the coziest pumpkin pasta bake! Jumbo pasta shells stuffed with pumpkin, cheese, and fresh sage. Then baked in a spicy Bolognese style red sauce that’s saucy, a touch spicy, creamy, and so delicious! This is a great fall pasta to serve any night of the week, or for your next gathering with family or friends.

overhead photo of Pumpkin Cheese Stuffed Pasta Bolognese Bake

And just like that, we have our very first pumpkin recipe of the fall season! Did I think the first pumpkin recipe would be a savory one? No, but it’s ok because we have something sweet coming tomorrow. You guys, I am so excited it’s fall!

I touched on this a bit yesterday, but this fall feels even more special than years past. I think we can all agree that this year has been weird, to say the least. It started out amazing with the HBH Super Simple cookbook tour still going strong and then things just, ahh…went weird. And at times definitely difficult. But hopefully we’re all making it through. And because of the very bizarre year we’ve had, this fall just feels like it’s going to be good.

I’m excited to actually be home this fall and not traveling from one place to the next. Sure I love a busy fall travel season, but I can also love a fall cozied-up at home even more. So you see, my mind is full of so many cozy fall recipes…including plenty of new pumpkin recipes.

And it’s all starts with this bolognese bake.

Pumpkin Cheese Stuffed Pasta Bolognese Bake | halfbakedharvest.com

The story.

Oh, this bake. It started out as something completely different, but somehow, someway, my mind turned it into this delicious bake you’re looking at today.

Originally there was no pumpkin, no pasta shell noodles, and instead, there was really just Bolognese sauce baked with pasta. But guys, this felt boring. It needed something more. Something to make it special enough for this time of year (yes, I’m cheesy, go with me on this). So then I kept thinking…and thinking. Once I really start to think on a recipe, there’s just no stopping my brain.

Pumpkin Cheese Stuffed Pasta Bolognese Bake | halfbakedharvest.com

I toss around idea after idea until I land on something I LOVE.

After a good amount of thinking, I finally came to this bake. It’s nothing close to your average pasta bake, but it sure is delicious.

overhead photo of Pumpkin Cheese Stuffed Pasta Bolognese Bake

The details.

This one is simple. But you do need some time to allow the sauce to simmer, and then for the pasta to bake. No more than an hour though, so this still makes for a great weeknight dinner.

To start, make the spicy, saucy, creamy, Bolognese sauce. This sauce is so good. Actually, in my dad’s words, “THIS SAUCE IS SO GOOD”. That’s coming from a man who’s constantly telling me he does not like meat sauces. So you should know…this one is special. It’s a simple mix of ground chicken (or ground beef), herbs, and spices. The key is to use a touch of fennel seeds and a bit of smoky paprika to really add some flavor. Next toss in some jarred tomatoes and a splash of white wine. Then let the sauce simmer for a bit to thicken up.

overhead close up photo of Pumpkin Cheese Stuffed Pasta Bolognese Bake

While the sauce simmers, make the stuffed shells. These sells are almost too good…warming pumpkin, fontina cheese, and fresh chopped sage. All stuffed into a pasta shell. Nothing not to love here.

I also added a little crumbled blue cheese, which I love. But if you’re one of those people who despise blue cheese, just omit it.

Ok, next, snuggle the pumpkin stuffed shells right into the Bolognese sauce, then top with provolone, and bake until the pasta is golden and the cheese has melted.

Hello to cheesy, pumpkiny pasta perfection.

overhead photo of Pumpkin Cheese Stuffed Pasta Bolognese Bake on dinner plate

This is one of the best dishes to come out of my kitchen as of late. That is a bold statement, but you guys, these stuffed shells are the perfect fall comfort food. Every last bite is a delicious one. My whole family really loved this meal.

I know it may seem a little odd to use pumpkin in such a savory way, but go with me on this one. The pumpkin lends a creaminess to the stuffed shells while providing a hint of both sweetness and autumn flavors. And when paired with that hearty Bolognese sauce?

Beyond delicious! Please give this one a try! You’ll love it, and your family will love you for making it!

overhead close up photo of Pumpkin Cheese Stuffed Pasta Bolognese Bake

Looking for other fall pasta recipes? Here are a few ideas: 

Pumpkin Cauliflower Gnocchi with Nutty Browned Butter and Whipped Ricotta

Butternut Squash Pasta Carbonara with Rosemary Bacon

Slow Cooker Red Wine Sunday Ragù Pasta

Brown Butter Brussels Sprout and Bacon Ravioli

Lastly, if you make this pumpkin cheese stuffed pasta shell bolognese bake, be sure to leave a comment and/or give this recipe a rating! Above all, I love to hear from you guys and always do my best to respond to each and every comment. And of course, if you do make this recipe, don’t forget to tag me on Instagram! Looking through the photos of recipes you all have made is my favorite!

Pumpkin Cheese Stuffed Pasta Shell Bolognese Bake

Pumpkin Cheese Stuffed Pasta Bolognese Bake | halfbakedharvest.com
4.19 from 436 votes
8
calories 503kcal
Prep20 minutes
Cook40 minutes
Total1 hour
The perfect warming dinner to cozy-up to and welcome the start of autumn!
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Ingredients 

Instructions 

  • 1. Preheat the oven to 400 degrees F. Lightly grease a 9x13 inch baking dish or a dish of similar size.
    2. Heat the olive oil in a large pot over high heat. When the oil shimmers, add the onion and cook 3-5 minutes. Add the meat, garlic, oregano, fennel, paprika, red pepper flakes, and a pinch each of salt and pepper. Cook until browned all over, about 5 minutes. Reduce the heat to low, add the marinara and wine. Simmer for 15 minutes or until the sauce thickens slightly. Taste and adjust seasonings as needed.
    3. Meanwhile, bring a large pot of salted water to a boil over high heat and boil the pasta until al dente according to package directions.
    4. In a medium bowl, combine the pumpkin, fontina, blue cheese (if using), sage, nutmeg, and a pinch each of salt and pepper.
    5. To assemble, spoon 3/4 of the Bolognese sauce into the bottom of the prepared baking dish. Working with one pasta shell at a time, spoon about 1 tablespoon of the pumpkin cheese mix into each shell, placing the filled shell into the baking dish as you go. Spoon the remaining Bolognese sauce over top of the shells. Add the provolone.
    6. Transfer the baking dish to the oven and bake 20-25 minutes or until the cheese has melted and is lightly browned on top. Serve topped with fresh oregano.

Notes

To Make Vegetarian: no problem, just omit the meat. No other changes needed.
To Make Ahead: complete the recipe through step 5. Let cool, and store in the fridge until ready to serve!

Nutrition

Calories: 503kcal

Nutritional information is only an estimate. The accuracy of the nutritional information for any recipe on this site is not guaranteed.

Did you make this recipe? Please rate & comment below.

overhead horizontal photo of Pumpkin Cheese Stuffed Pasta Bolognese Bake

Meet Tieghan Gerard

I'm Tieghan, the recipes you'll find here are inspired by the people and places I love most. I try to live simply, eat seasonally, and cook with whole foods. My hope is to inspire a love for amazing food, as well as the courage to try something new!

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4.19 from 436 votes (375 ratings without comment)

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203 Comments

  1. Ada says:

    3 stars
    Love the bolognese, but maybe I added too much sage that it kind of overpowered the dish for me. I’m considering trying this again with less sage and pumpkin purée, and more cheese! Thanks for the inspiration though!

    1. halfbakedharvest says:

      Hi Ada! I hope you do try this again with less sage! Please let me know if there is anything I can help with! xTieghan

  2. Cassandra Owens says:

    5 stars
    Made this tonight and it was REALLY GOOD. It’s also quite customizable (more bleu cheese or less, different meats in the Bolognese, etc). Will definitely be making again soon ♥️

    1. halfbakedharvest says:

      Love that! Thank you so much for trying this Cassandra! xTieghan

  3. Lindy Southwell says:

    I went to two groceries and couldn’t find any of the large noodles so we turned it into a lasagna! Turned out SO delicious! My seven year old helped us make it and she ate every bite! We’ll definitely do this again.

    1. halfbakedharvest says:

      Hi Lindy! I am so happy this turned out so well for you! Thank you so much for trying it! xTieghan

  4. Liz says:

    5 stars
    Loved this! Even my husband who is very questionable with pumpkin as a dinner (not dessert) ingredient loved it. All the flavors go together perfectly.

    1. halfbakedharvest says:

      Yes! So happy this turned out so well for you! Thank you so much Liz! xTieghan

  5. Tammy Frazier says:

    5 stars
    Made this tonight for a chilly fall evening. Was a perfect, cozy, tasty meal! My store was out of canned pumpkin purée so I made my own… which I think worked out to our favor! Was absolutely delicious! Everyone loved it. Will definitely make again!

    1. halfbakedharvest says:

      Thank you so much Tammy! xTieghan

  6. Morgan says:

    5 stars
    Delicious! Saw this on your Instagram stories. Followed the recipe exactly, just subbed in gouda for fontina since my grocery store didn’t have it. My husband loved it and will definitely be making again. Thanks for the recipe!

    1. halfbakedharvest says:

      Thank you for trying this one, Morgan! xTieghan

  7. Tracy says:

    Hey Tieghan—
    Looking forward to making this! In the first instructions you say to throw in a can of tomatoes but then the recipe calls for a jar of marinara. Which one should it be?
    Thank you!

    1. halfbakedharvest says:

      Hey Tracy,
      You want to use the jar of marinara. I hope you love the recipe, please let me know if you have any other questions! xTieghan

  8. Karen says:

    5 stars
    OMG – this was wonderful! Because I didn’t have ground beef on hand, I used a pound of sweet Italian sausage. I added the spices in the recipe but also added 2 tsp sugar and a splash of balsamic drizzle, if you don’t like blue cheese, don’t worry. You can’t taste it but I’m sure it contributes to the complexity of the final dish. During these weird quarantine times, don’t count on being able to buy canned pumpkin. However, butternut squash works just fine. We loved this recipe!!!

    1. halfbakedharvest says:

      I am so happy this turned out so well for you, Karen! Thank you so much for trying this recipe! xTieghan

  9. Amy says:

    I’m definitely making this one night this week! I’m curious how it would turn out mixing some ricotta with the pumpkin…have you tried?

    1. halfbakedharvest says:

      Hey Amy,
      I haven’t tried that, but sounds like a great idea! I hope you love the recipe, please let me know if you have any other questions! xTieghan

  10. Michael says:

    Hi! Excited to make this one. Can you substitute in red wine for this recipe?

    1. halfbakedharvest says:

      Hey Michael,
      Sure, red wine would be great! I hope you love the recipe, please let me know if you have any other questions! xTieghan

  11. LW says:

    5 stars
    Fabulous entrance in to fall dish! Major hit at our house!

    1. halfbakedharvest says:

      Love that! Thank you for trying this one! xTieghan

  12. Michelle says:

    This looks amazing! How long does it last in the fridge if I want to make it ahead of time?

    1. halfbakedharvest says:

      Hey Michelle,
      I wouldn’t make more than 2 days ahead of time. I hope you love the recipe, please let me know if you have any other questions! xTieghan

  13. Chelsea Santos says:

    5 stars
    This was so good! Lots of the flavors, and they all go together so incredibly well. This will definitely be a fall staple. Highly recommend; nice work Tieghan!

    1. halfbakedharvest says:

      Thank you so much Chelsea! I am really happy this turned out so well for you! xTieghan

  14. Rai says:

    I made this last night and it was so delicious! My grocery store was already out of pumpkin (!), so I substituted with a butternut squash puree (I roasted it in the oven with butter/salt/pepper, then pureed it). Turned out great, thank you!!

    1. halfbakedharvest says:

      Thank you so much Rai! I am so happy this turned out so well for you! xTieghan

  15. Sharidan says:

    5 stars
    So delicious as always! I couldn’t find jumbo shells in my local grocery store, so I made a game time decision and made this into a lasagna. The flavors were amazing and it was a huge hit with dinner company!

    1. halfbakedharvest says:

      Amazing! Thank you so much for trying this recipe, Sharidan!! xTieghan