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Pumpkin Cheese Stuffed Shells Bolognese Bake…the perfect warming dinner to welcome the start of autumn. It’s the coziest pumpkin pasta bake! Jumbo pasta shells stuffed with pumpkin, cheese, and fresh sage. Then baked in a spicy Bolognese style red sauce that’s saucy, a touch spicy, creamy, and so delicious! This is a great fall pasta to serve any night of the week, or for your next gathering with family or friends.

overhead photo of Pumpkin Cheese Stuffed Pasta Bolognese Bake

And just like that, we have our very first pumpkin recipe of the fall season! Did I think the first pumpkin recipe would be a savory one? No, but it’s ok because we have something sweet coming tomorrow. You guys, I am so excited it’s fall!

I touched on this a bit yesterday, but this fall feels even more special than years past. I think we can all agree that this year has been weird, to say the least. It started out amazing with the HBH Super Simple cookbook tour still going strong and then things just, ahh…went weird. And at times definitely difficult. But hopefully we’re all making it through. And because of the very bizarre year we’ve had, this fall just feels like it’s going to be good.

I’m excited to actually be home this fall and not traveling from one place to the next. Sure I love a busy fall travel season, but I can also love a fall cozied-up at home even more. So you see, my mind is full of so many cozy fall recipes…including plenty of new pumpkin recipes.

And it’s all starts with this bolognese bake.

Pumpkin Cheese Stuffed Pasta Bolognese Bake | halfbakedharvest.com

The story.

Oh, this bake. It started out as something completely different, but somehow, someway, my mind turned it into this delicious bake you’re looking at today.

Originally there was no pumpkin, no pasta shells, and instead, there was really just Bolognese sauce baked with pasta. But guys, this felt boring. It needed something more. Something to make it special enough for this time of year (yes, I’m cheesy, go with me on this). So then I kept thinking…and thinking. Once I really start to think on a recipe, there’s just no stopping my brain.

Pumpkin Cheese Stuffed Pasta Bolognese Bake | halfbakedharvest.com

I toss around idea after idea until I land on something I LOVE.

After a good amount of thinking, I finally came to this bake. It’s nothing close to your average pasta bake, but it sure is delicious.

overhead photo of Pumpkin Cheese Stuffed Pasta Bolognese Bake

The details.

This one is simple. But you do need some time to allow the sauce to simmer, and then for the pasta to bake. No more than an hour though, so this still makes for a great weeknight dinner.

To start, make the spicy, saucy, creamy, Bolognese sauce. This sauce is so good. Actually, in my dad’s words, “THIS SAUCE IS SO GOOD”. That’s coming from a man who’s constantly telling me he does not like meat sauces. So you should know…this one is special. It’s a simple mix of ground chicken (or beef), herbs, and spices. The key is to use a touch of fennel seeds and a bit of smoky paprika to really add some flavor. Next toss in some jarred tomatoes and a splash of white wine. Then let the sauce simmer for a bit to thicken up.

overhead close up photo of Pumpkin Cheese Stuffed Pasta Bolognese Bake

While the sauce simmers, make the stuffed shells. These sells are almost too good…warming pumpkin, fontina cheese, and fresh chopped sage. All stuffed into a pasta shell. Nothing not to love here.

I also added a little crumbled blue cheese, which I love. But if you’re one of those people who despise blue cheese, just omit it.

Ok, next, snuggle the pumpkin stuffed shells right into the Bolognese sauce, then top with provolone, and bake until the pasta is golden and the cheese has melted.

Hello to cheesy, pumpkiny pasta perfection.

overhead photo of Pumpkin Cheese Stuffed Pasta Bolognese Bake on dinner plate

This is one of the best dishes to come out of my kitchen as of late. That is a bold statement, but you guys, these stuffed shells are the perfect fall comfort food. Every last bite is a delicious one. My whole family really loved this meal.

I know it may seem a little odd to use pumpkin in such a savory way, but go with me on this one. The pumpkin lends a creaminess to the stuffed shells while providing a hint of both sweetness and autumn flavors. And when paired with that hearty Bolognese sauce?

Beyond delicious! Please give this one a try! You’ll love it, and your family will love you for making it!

overhead close up photo of Pumpkin Cheese Stuffed Pasta Bolognese Bake

Looking for other fall pasta recipes? Here are a few ideas: 

Pumpkin Cauliflower Gnocchi with Nutty Browned Butter and Whipped Ricotta

Butternut Squash Pasta Carbonara with Rosemary Bacon

Slow Cooker Red Wine Sunday Ragù Pasta

Brown Butter Brussels Sprout and Bacon Ravioli

Lastly, if you make this pumpkin cheese stuffed pasta shell bolognese bake, be sure to leave a comment and/or give this recipe a rating! Above all, I love to hear from you guys and always do my best to respond to each and every comment. And of course, if you do make this recipe, don’t forget to tag me on Instagram! Looking through the photos of recipes you all have made is my favorite!

Pumpkin Cheese Stuffed Pasta Shell Bolognese Bake

Author: Tieghan Gerard
Prep Time 20 minutes
Cook Time 40 minutes
Total Time 1 hour
Servings: 8
Calories Per Serving: 503 kcal

Nutritional information is only an estimate. The accuracy of the nutritional information for any recipe on this site is not guaranteed.

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Ingredients

US Customary - Metric

Instructions

  • 1. Preheat the oven to 400 degrees F. Lightly grease a 9x13 inch baking dish or a dish of similar size.
    2. Heat the olive oil in a large pot over high heat. When the oil shimmers, add the onion and cook 3-5 minutes. Add the meat, garlic, oregano, fennel, paprika, red pepper flakes, and a pinch each of salt and pepper. Cook until browned all over, about 5 minutes. Reduce the heat to low, add the marinara and wine. Simmer for 15 minutes or until the sauce thickens slightly. Taste and adjust seasonings as needed.
    3. Meanwhile, bring a large pot of salted water to a boil over high heat and boil the pasta until al dente according to package directions.
    4. In a medium bowl, combine the pumpkin, fontina, blue cheese (if using), sage, nutmeg, and a pinch each of salt and pepper.
    5. To assemble, spoon 3/4 of the Bolognese sauce into the bottom of the prepared baking dish. Working with one pasta shell at a time, spoon about 1 tablespoon of the pumpkin cheese mix into each shell, placing the filled shell into the baking dish as you go. Spoon the remaining Bolognese sauce over top of the shells. Add the provolone.
    6. Transfer the baking dish to the oven and bake 20-25 minutes or until the cheese has melted and is lightly browned on top. Serve topped with fresh oregano.

Notes

To Make Vegetarian: no problem, just omit the meat. No other changes needed.
To Make Ahead: complete the recipe through step 5. Let cool, and store in the fridge until ready to serve!
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Comments

  1. 5 stars
    What kind of tomatoes are you adding? You mentioned tomatoes in the narrative, but I didn’t see them listed in your ingredients. I added a half jar of sun dried tomatoes which I love.

    Reply

  2. Hi Tieghan, thank you for a great recipe! I’m gluten free and would love to make this recipe work for my family. GF jumbo shells are nearly impossible to find… can you think of another suggestion to make this work GF?

    Reply

  3. 5 stars
    Really good, made all my picky eaters happy 🙂 The sauce has real depth of flavour and the big shells are fun – just ask the 7-year old.

    Our stores have a limited cheese selection, so substituted grated gouda for fontina in the filling, and cubed soft mozzarella on top. I’d be proud to serve this to anybody.

    Thank you Tieghan 🙂

    Reply

  4. 5 stars
    DELICIOUS and so easy!! This is a keeper for sure. We don’t drink white wine and never have it on hand, so I replaced it with an equal amount of low-sodium chicken broth. Great recipe for a cooler night as we start to welcome Autumn!

    Reply

  5. I make this every year I cook for Thanksgiving and this year, I also cooked it for my sibling. They loved it! I always have a hard time finding provolone for this recipe, and just a tip: when substituting for another cheese, don’t use gouda!!! It’s good but it doesn’t melt well, which I forgot about when buying for this recipe.

    Reply

    1. Hey Juju,
      Thank you so much for making this recipe each year, I love to hear that it is always a winner! I hope you had a wonderful Thanksgiving! xx

      Reply

  6. Great recipe! My husband was a little skeptical with the pumpkin and marinara sauce combination(I think he thought it would be sweet). We made it without the meat and it was a huge win. The flavors all work together great. Will definitely make again!

    Reply

    1. Hey Debbie,
      Happy Friday!! Thanks a lot for giving this recipe a try, I love to hear that it was enjoyed! xx

      Reply

  7. 5 stars
    There are a lot of elements to this dish that might scare the average cook – such as pumpkin, sage, fennel, blue cheese. I was skeptical myself, but my curiosity made me try this. I did have to make a couple of modifications based on what I had on hand. I used red wine instead of white and I used goat cheese instead of blue. While these changes probably altered the flavor profile, I thought the end result was fantastic.

    Reply

    1. Hey there,
      Fantastic!! I love to hear that the recipe was enjoyed, thanks for giving it a try. Have the best week:)) xT

      Reply

    1. Hey Colleen,
      Fantastic!! I am so glad that this recipe was enjoyed, thanks a lot for giving it a try. Have the best week! xTieghan

      Reply

  9. 5 stars
    This was my first recipe I made of yours and it turned out great! I have never made stuffed shells before and the recipe was easy to follow. The blue cheese really added a nice flavor. I’ll definitely be making this again, but next time I would make more filling as there wasn’t enough for all of the shells.

    Reply

    1. Hey! This is awesome, I’m so happy to hear this recipe turned out the way you’d hoped! 🙂 xTieghan

      Reply

  10. 5 stars
    This is one of my go-to recipes for fall every year now! It has all the flavors you could possibly want on a chilly night in October 🙂 I’ve used ground beef and ground turkey, and it comes out great either way! The leftovers are the best part!

    Reply